Freely-available Literature

Currently indexing 3343 freely-available titles

The following titles are freely-available, or include a link to a preprint or postprint.

Physicochemical Controls on Zones of Higher Coral Stress Where Black Band Disease Occurs at Mākua Reef, Kaua‘i, Hawai‘i

Oberle FKJ, Storlazzi CD, Cheriton OM, Takesue RK, Hoover DJ, Logan JB, Runyon C, Kellogg CA, Johnson CD, Swarzenski PW. Physicochemical Controls on Zones of Higher Coral Stress Where Black Band Disease Occurs at Mākua Reef, Kaua‘i, Hawai‘i. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00552/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Pervasive and sustained coral diseases contribute to the systemic degradation of reef ecosystems, however, to date an understanding of the physicochemical controls on a coral disease event is still largely lacking. Water circulation and residence times and submarine groundwater discharge (SGD) all determine the degree to which reef organisms are exposed to the variable chemistry of overlying waters; understanding these physical controls is thus necessary to interpret spatial patterns in coral health. The recent discovery of coral Black Band Disease at Mākua Reef on Kaua‘i, Hawai‘i prompted an investigation into the physicochemical drivers and geomorphic controls of reef water circulation, and the temporally variable nutrient fluxes derived from SGD. Results reveal localized stagnant water parcels at Mākua Reef where groundwater-derived high nutrient loading and low salinities act in concert as stressors to coralline health – and where Black Band Disease was uniquely identified. The observed high nutrient levels during low tide conditions are likely associated with nearby upstream cesspools and drain fields. Information obtained using such a multidisciplinary approach has direct value for successful management of coastal aquifers and the health and sustainability of adjacent nearshore coral reef ecosystems.

Coastal Harmful Algae Bloom Monitoring via a Sustainable, Sail-Powered Mobile Platform

Beckler JS, Arutunian E, Moore T, Currier B, Milbrandt E, Duncan S. Coastal Harmful Algae Bloom Monitoring via a Sustainable, Sail-Powered Mobile Platform. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00587/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Harmful algae blooms (HABs) in coastal marine environments are increasing in number and duration, pressuring local resource managers to implement mitigation solutions to protect human and ecosystem health. However, insufficient spatial and temporal observations create uninformed management decisions. In order to better detect and map blooms, as well as the environmental conditions responsible for their formation, long-term, unattended observation platforms are desired. In this article, we describe a new cost-efficient, autonomous, mobile platform capable of accepting several sensors that can be used to monitor HABs in near real time. The Navocean autonomous sail-powered surface vehicle is deployable by a single person from shore, capable of waypoint navigation in shallow and deep waters, and powered completely by renewable energy. We present results from three surveys of the Florida Red Tide HAB (Karenia brevis) of 2017–2018. The vessel made significant progress toward waypoints regardless of wind conditions while underway measurements revealed patches of elevated chl. a likely attributable to the K. brevis blooms as based on ancillary measurements. Measurements of colored dissolved organic matter (CDOM) and turbidity provided an environmental context for the blooms. While the autonomous sailboat directly adds to our phytoplankton/HAB monitoring capabilities, the package may also help to ground-truth satellite measurements of HABs if careful validation measurements are performed. Finally, several other pending and future use cases for coastal and inland monitoring are discussed. To our knowledge, this is the first demonstration of a sail-driven vessel used for coastal HAB monitoring.

The Bottlenose Dolphin Epigenetic Aging Tool (BEAT): A Molecular Age Estimation Tool for Small Cetaceans

Beal AP, Kiszka JJ, Wells RS, Eirin-Lopez JM. The Bottlenose Dolphin Epigenetic Aging Tool (BEAT): A Molecular Age Estimation Tool for Small Cetaceans. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00561/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Age constitutes a critical parameter for the study of animal populations, providing information about development, environmental effects, survival, and reproduction. Unfortunately, age estimation is not only challenging in large, mobile and legally protected species, but often involves invasive sampling methods. The present work investigates the association between epigenetic modifications and chronological age in small cetaceans. For that purpose, DNA methylation at age-linked genes was characterized in an extensively studied, long-term resident common bottlenose dolphin (Tursiops truncatus) community from Sarasota Bay (FL, United States) for which sampled individuals have a known age. Results led to the identification of several CpG sites that are significantly correlated to chronological age in this species with the potential for sex to play a role in the modulation of this correlation. These findings have allowed for the development and validation of the “Bottlenose dolphin Epigenetic Age estimation Tool” (BEAT), improving minimally-invasive age estimation in free-ranging small cetaceans. Overall, the BEAT proved to be accurate in estimating age in these organisms. Given its minimally-invasive nature and potential large-scale implementation using skin biopsy samples, this tool can be used to generate age data from free-ranging small cetacean populations.

Coral Reef Monitoring, Reef Assessment Technologies, and Ecosystem-Based Management

Obura DO, Aeby G, Amornthammarong N, Appeltans W, Bax N, Bishop J, Brainard RE, Chan S, Fletcher P, Gordon TAC, et al. Coral Reef Monitoring, Reef Assessment Technologies, and Ecosystem-Based Management. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00580/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Coral reefs are exceptionally biodiverse and human dependence on their ecosystem services is high. Reefs experience significant direct and indirect anthropogenic pressures, and provide a sensitive indicator of coastal ocean health, climate change, and ocean acidification, with associated implications for society. Monitoring coral reef status and trends is essential to better inform science, management and policy, but the projected collapse of reef systems within a few decades makes the provision of accurate and actionable monitoring data urgent. The Global Coral Reef Monitoring Network has been the foundation for global reporting on coral reefs for two decades, and is entering into a new phase with improved operational and data standards incorporating the Essential Ocean Variables (EOVs) (www.goosocean.org/eov) and Framework for Ocean Observing developed by the Global Ocean Observing System. Three EOVs provide a robust description of reef health: hard coral cover and composition, macro-algal canopy cover, and fish diversity and abundance. A data quality model based on comprehensive metadata has been designed to facilitate maximum global coverage of coral reef data, and tangible steps to track capacity building. Improved monitoring of events such as mass bleaching and disease outbreaks, citizen science, and socio-economic monitoring have the potential to greatly improve the relevance of monitoring to managers and stakeholders, and to address the complex and multi- dimensional interactions between reefs and people. A new generation of autonomous vehicles (underwater, surface, and aerial) and satellites are set to revolutionize and vastly expand our understanding of coral reefs. Promising approaches include Structure from Motion image processing, and acoustic techniques. Across all systems, curation of data in linked and open online databases, with an open data culture to maximize benefits from data integration, and empowering users to take action, are priorities. Action in the next decade will be essential to mitigate the impacts on coral reefs from warming temperatures, through local management and informing national and international obligations, particularly in the context of the Sustainable Development Goals, climate action, and the role of coral reefs as a global indicator. Mobilizing data to help drive the needed behavior change is a top priority for coral reef observing systems.

Toward a European Coastal Observing Network to Provide Better Answers to Science and to Societal Challenges; The JERICO Research Infrastructure

Farcy P, Durand D, Charria G, Painting SJ, Tamminem T, Collingridge K, Grémare AJ, Delauney L, Puillat I. Toward a European Coastal Observing Network to Provide Better Answers to Science and to Societal Challenges; The JERICO Research Infrastructure. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00529/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The coastal area is the most productive and dynamic environment of the world ocean, offering significant resources and services for mankind. As exemplified by the UN Sustainable Development Goals, it has a tremendous potential for innovation and growth in blue economy sectors. Due to the inherent complexity of the natural system, the answers to many scientific and societal questions are unknown, and the impacts of the cumulative stresses imposed by anthropogenic pressures (such as pollution) and climate change are difficult to assess and forecast. A major challenge for the scientific community making observations of the coastal marine environment is to integrate observations of Essential Ocean Variables for physical, biogeochemical, and biological processes on appropriate spatial and temporal scales, and in a sustained and scientifically based manner. Coastal observations are important for improving our understanding of the complex biotic and abiotic processes in many fields of research such as ecosystem science, habitat protection, and climate change impacts. They are also important for improving our understanding of the impacts of human activities such as fishing and aquaculture, and underpin risk monitoring and assessment. The observations enable us to better understand ecosystems and the societal consequences of overfishing, disease (particularly shellfish), loss of biodiversity, coastline withdrawal, and ocean acidification, amongst others. The European coastal observing infrastructure JERICO-RI, has gathered and organized key communities embracing new technologies and providing a future strategy, with recommendations on the way forward and on governance. Particularly, the JERICO community acknowledges that the main providers of coastal observations are: (1) research infrastructures, (2) national monitoring programs, and (3) monitoring activities performed by marine industries. The scope of this paper is to present some key elements of our coastal science strategy to build it on long term. It describes how the pan-European JERICO community is building an integrated and innovation-driven coastal research infrastructure for Europe. The RI embraces emerging technologies which will revolutionize the way the ocean is observed. Developments in biotechnology (molecular and optical sensors, omics-based biology) will soon provide direct and online access to chemical and biological variables including in situ quantification of harmful algae and contaminants. Using artificial intelligence (AI), Internet of Things will soon provide operational platforms and autonomous and remotely operated smart sensors. Embracing key technologies, high quality open access data, modeling and satellite observations, it will support sustainable blue growth, warning and forecasting coastal services and healthy marine ecosystem. JERICO-FP7 is the European 7th framework project named JERICO under Grant Agreement No. 262584. JERICO-NEXT is the European Horizon-2020 project under Grant Agreement No. 654410. JERICO-RI is the European coastal observing research infrastructure established and structured through JERICO-FP7 and JERICO-NEXT, and beyond.

Coastal Impacts Driven by Sea-Level Rise in Cartagena de Indias

Orejarena-Rondón AF, Sayol JM, Marcos M, Otero L, Restrepo JC, Hernández-Carrasco I, Orfila A. Coastal Impacts Driven by Sea-Level Rise in Cartagena de Indias. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00614/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

This work analyzes the coastal impacts of the combined effect of extreme waves and sea level extremes, including surges and projected mean sea level rise in Bocagrande, Cartagena (Colombia). Extreme waves are assessed from a wave reanalysis that are propagated from deep waters to the beach considering the hydrodynamic processes and taking into account the interaction between waves and the coastal elevation within the study area. First, we consider present sea level, storm surges and waves affecting the area. Next, we analyze the effect of sea level rise according to a moderate (RCP4.5) climate change scenario for the 21st century (years 2025, 2050, 2075, and 2100). The most pessimistic scenario (year 2100) yields a percentage of flooded area of 97.2%, thus revealing the major threat that represents sea level rise for coastal areas in the Caribbean Sea.

Active Whale Avoidance by Large Ships: Components and Constraints of a Complementary Approach to Reducing Ship Strike Risk

Gende SM, Vose L, Baken J, Gabriele CM, Preston R, A. Hendrix N. Active Whale Avoidance by Large Ships: Components and Constraints of a Complementary Approach to Reducing Ship Strike Risk. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00592/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The recurrence of lethal ship-whale collisions (‘ship strikes’) has prompted management entities across the globe to seek effective ways for reducing collision risk. Here we describe ‘active whale avoidance’ defined as a mariner making operational decisions to reduce the chance of a collision with a sighted whale. We generated a conceptual model of active whale avoidance and, as a proof of concept, apply data to the model based on observations of humpback whales surfacing in the proximity of large cruise ships, and simulations run in a full-mission bridge simulator and commonly used pilotage software. Application of the model demonstrated that (1) the opportunities for detecting a surfacing whale are often limited and temporary, (2) the cumulative probability of detecting one of the available ‘cues’ of whale’s presence (and direction of travel) decreases with increased ship-to-whale distances, and (3) following detection time delays occur related to avoidance operations. These delays were attributed to the mariner evaluating competing risks (e.g., risk of whale collision vs. risk to human life, the ship, or other aspects of the marine environment), deciding upon an appropriate avoidance action, and achieving a new operational state by the ship once a maneuver is commanded. We thus identify several options for enhancing whale avoidance including training Lookouts to focus search efforts on a ‘Cone of Concern,’ defined here as the area forward of the ship where whales are at risk of collision based on the whale and ship’s transit/swimming speed and direction of travel. Standardizing protocols for rapid communication of relevant sighting information among bridge team members can also increase avoidance by sharing information on the whale that is of sufficient quality to be actionable. We also found that, for marine pilots in Alaska, a slight change in course tends to be preferable to slowing the ship in response to a single sighted whale, owing, in part, to the substantial distance required to achieve an effective speed reduction in a safe manner. However, planned, temporary speed reductions in known areas of whale aggregations, particularly in navigationally constrained areas, provide a greater range of options for avoidance, highlighting the value of real-time sharing of whale sighting data by mariners. Development and application of these concepts in modules in full mission ship simulators can be of significant value in training inexperienced mariners by replicating situations and effective avoidance maneuvers (reducing the need to ‘learn on the water’), helping regulators understand the feasibility of avoidance options, and, identifying priority research threads. We conclude that application of active whale avoidance techniques by large ships is a feasible yet underdeveloped tool for reducing collision risk globally, and highlight the value of local collaboration and integration of ideas across disciplines to finding solutions to mutually desired conservation outcomes.

Simulating the Effects of Alternative Management Measures of Trawl Fisheries in the Central Mediterranean Sea: Application of a Multi-Species Bio-economic Modeling Approach

Russo T, D'Andrea L, Franceschini S, Accadia P, Cucco A, Garofalo G, Gristina M, Parisi A, Quattrocchi G, Sabatella RFelicita, et al. Simulating the Effects of Alternative Management Measures of Trawl Fisheries in the Central Mediterranean Sea: Application of a Multi-Species Bio-economic Modeling Approach. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00542/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

In the last decades, the Mediterranean Sea experienced an increasing trend of fish stocks in overfishing status. Therefore, management actions to achieve a more sustainable exploitation of fishery resources are required and compelling. In this study, a spatially explicit multi-species bio-economic modeling approach, namely, SMART, was applied to the case study of central Mediterranean Sea to assess the potential effects of different trawl fisheries management scenarios on the demersal resources. The approach combines multiple modeling components, integrating the best available sets of spatial data about catches and stocks, fishing footprint from vessel monitoring systems (VMS) and economic parameters in order to describe the relationships between fishing effort pattern and impacts on resources and socio-economic consequences. Moreover, SMART takes into account the bi-directional connectivity between spawning and nurseries areas of target species, embedding the outcomes of a larvae transport Lagrangian model and of an empirical model of fish migration. Finally, population dynamics and trophic relationships are considered using a MICE (Models of Intermediate Complexity) approach. SMART simulates the fishing effort reallocation resulting from the introduction of different management scenarios. Specifically, SMART was applied to evaluate the potential benefits of different management approaches of the trawl fisheries targeting demersal stocks (deepwater rose shrimp Parapenaeus longirostris, the giant red shrimp Aristaeomorpha foliacea, the European hake Merluccius merluccius, and the red mullet Mullus barbatus) in the Strait of Sicily. The simulated management scenarios included a reduction of both fishing capacity and effort, two different sets of temporal fishing closures, and two sets of spatial fishing closures, defined involving fishers. Results showed that both temporal and spatial closures are expected to determine a significant improvement in the exploitation pattern for all the species, ultimately leading to the substantial recovery of spawning stock biomass for the stocks. Overall, one of the management scenarios suggested by fishers scored better and confirms the usefulness of participatory approaches, suggesting the need for more public consultation when dealing with resource management at sea.

Land Use Impacts on Coral Reef Health: A Ridge-to-Reef Perspective

Carlson RR, Foo SA, Asner GP. Land Use Impacts on Coral Reef Health: A Ridge-to-Reef Perspective. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00562/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1117095_45_Marine_20191008_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Over 60% of the world’s reefs experience damage from local activities such as overfishing, coastal development, and watershed pollution. Land-based sources of pollution are a critical threat to coral reefs, and understanding “ridge-to-reef” changes is urgently needed to improve management and coral survival in the Anthropocene. We review existing literature on spatial-ecological connections between land use and coral health, specifically examining vegetative, agricultural, urban, and other land-use types. In general, forested land use is positively related to metrics of coral condition, while anthropogenic land uses like urban development and agriculture drive a decline in coral cover, diversity, colony size, and structural complexity. However, land-use and land-cover impacts vary across time and space, and small portions of the landscape (e.g., discrete segments of unpaved roads, grazed and scalded hillsides) may have an outsized effect on reef pollution, presenting opportunities for targeted conservation. Some coral species show resilience under land-use and land-cover change, and the impact of land use on coral recovery from bleaching remains an active area of research. Finally, a spatial bibliography of existing literature reveals that most ridge-to-reef studies focus on a handful of regional hotspots, surface water, and watershed-scale dynamics; more research is needed to address groundwater connectivity and to compare land-use impacts across multiple regions and scales. Approaches from landscape ecology that assess spatial patterns of, and synergies between, interlocking land cover may assist conservation managers in designing more resilient reefscapes.

Advancing Coastal Risk Reduction Science and Implementation by Accounting for Climate, Ecosystems, and People

Silver JM, Arkema KK, Griffin RM, Lashley B, Lemay M, Maldonado S, Moultrie SH, Ruckelshaus M, Schill S, Thomas A, et al. Advancing Coastal Risk Reduction Science and Implementation by Accounting for Climate, Ecosystems, and People. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00556/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Climate change and population growth are degrading coastal ecosystems and increasing risks to communities and infrastructure. Reliance on seawalls and other types of hardened shorelines is unsustainable in an era of rising seas, given the costs to build and maintain these structures and their unintended consequences on ecosystems. This is especially true for communities that depend on coastal and marine ecosystems for livelihoods and sustenance. Protecting and restoring coral reefs and coastal forests can be lower cost, sustainable alternatives for shoreline protection. However, decision-makers often lack basic information about where and under what conditions ecosystems reduce risk to coastal hazards and who would benefit. To better understand where to prioritize ecosystems for coastal protection, we assessed risk reduction provided by coral reefs, mangroves, and seagrass along the entire coast of The Bahamas, under current and future climate scenarios. Modeled results show that the population most exposed to coastal hazards would more than double with future sea-level rise and more than triple if ecosystems were lost or degraded. We also found that ecosystem-based risk reduction differs across islands due to variation in a suite of ecological, physical, and social variables. On some populated islands, like Grand Bahama and Abaco, habitats provide protection to disproportionately large numbers of people compared to the rest of the country. Risk reduction provided by ecosystems is also evident for several sparsely populated, remote coastal communities, which in some cases, have large elderly populations. The results from our analyses were critical for engaging policy-makers in discussions about employing natural and nature-based features for coastal resilience. After hurricanes Joaquin and Matthew hit The Bahamas in 2016 and 2017, our assessment of coastal risk reduction and the multiple benefits provided by coastal ecosystems helped pave the way for an innovative loan from the Inter-American Development Bank to the Government of The Bahamas to invest in mangrove restoration for coastal resilience. This work serves as an example for other regions and investors aiming to use assessments of ecosystem services to inform financing of natural and nature-based approaches for coastal resilience and climate adaptation.

Bycatch Quotas, Risk Pools, and Cooperation in the Pacific Whiting Fishery

Holland DS, Martin C. Bycatch Quotas, Risk Pools, and Cooperation in the Pacific Whiting Fishery. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00600/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The United States Pacific whiting fishery uses mid-water trawl gear to target Pacific whiting off the United States West Coast. The fishery is subject to sector-specific bycatch caps for Chinook salmon (Oncorhynchus tshawytscha) and several rockfish species (widow rockfish–Sebastes entomelas, canary rockfish-Sebastes pinniger, darkblotched rockfish–Sebastes crameri, Pacific Ocean Perch (POP)-Sebastes alutus, and yelloweye rockfish-Sebastes ruberrimus). Chinook bycatch can include fish from endangered populations and rockfish stocks were recovering from severe depletion though most are now rebuilt. Catch of these species is rare and uncertain, making it difficult for vessels to meet strict individual performance standards. Consequently the industry has developed risk pools in which bycatch quota for a group of vessels is pooled, but vessels are required to follow practices that minimize bycatch risk including temporal and spatial fishing restrictions. The risk pools also require vessels to share information about bycatch hotspots enabling a cooperative approach to avoid bycatch based on real-time information. In this article we discuss the formation and structure of these risk pools, the bycatch reduction strategies they apply, and outcomes in the fishery in terms of observed bycatch avoidance behavior and utilization of target species. The analysis demonstrates the ability of these fishers to keep bycatch within aggregate limits and keep individual vessels from being tied up due to quota overages.

Better Together: The Uses of Ecological and Socio-Economic Indicators With End-to-End Models in Marine Ecosystem Based Management

Tam JC, Fay G, Link JS. Better Together: The Uses of Ecological and Socio-Economic Indicators With End-to-End Models in Marine Ecosystem Based Management. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00560/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Ecological and socio-economic indicators are used as proxies for attributes of ecosystems and human communities, respectively. End-to-end models are used to predict how ecosystems will respond to alternative management actions and changing environmental conditions. Despite the importance of these two tools for Ecosystem-Based Management (EBM), there has been limited integration of ecological indicators directly into end-to-end models; the former are typically calculated post hoc with output from the latter. Here we explore how ecological indicators can be better incorporated into end-to-end models and examine the importance of this union with regards to cumulative impacts and indirect effects, setting management objectives, practical indicator selection, and applications to management. We conclude that the inclusion of ecological indicators in end-to-end models is not only feasible, but provides needed guidance on describing ecosystem status relative to strategic as well as tactical ecosystem-level management goals, and will escalate the implementation of EBM.

Integrated Risk Assessment for the Blue Economy

Hodgson EE, Essington TE, Samhouri JF, Allison EH, Bennett NJ, Bostrom A, Cullen AC, Kasperski S, Levin PS, Poe MR. Integrated Risk Assessment for the Blue Economy. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00609/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

With the anticipated boom in the ‘blue economy’ and associated increases in industrialization across the world’s oceans, new and complex risks are being introduced to ocean ecosystems. As a result, conservation and resource management increasingly look to factor in potential interactions among the social, ecological and economic components of these systems. Investigation of these interactions requires interdisciplinary frameworks that incorporate methods and insights from across the social and biophysical sciences. Risk assessment methods, which have been developed across numerous disciplines and applied to various real-world settings and problems, provide a unique connection point for cross-disciplinary engagement. However, research on risk is often conducted in distinct spheres by experts whose focus is on narrow sources or outcomes of risk. Movement toward a more integrated treatment of risk to ensure a balanced approach to developing and managing ocean resources requires cross-disciplinary engagement and understanding. Here, we provide a primer on risk assessment intended to encourage the development and implementation of integrated risk assessment processes in the emerging blue economy. First, we summarize the dominant framework for risk in the ecological/biophysical sciences. Then, we discuss six key insights from the long history of risk research in the social sciences that can inform integrated assessments of risk: (1) consider the subjective nature of risk, (2) understand individual social and cultural influences on risk perceptions, (3) include diverse expertise, (4) consider the social scales of analysis, (5) incorporate quantitative and qualitative approaches, and (6) understand interactions and feedbacks within systems. Finally, we show how these insights can be incorporated into risk assessment and management, and apply them to a case study of whale entanglements in fishing gear off the United States west coast.

Coasts in Peril? A Shoreline Health Perspective

Cooper JAG, Jackson DWT. Coasts in Peril? A Shoreline Health Perspective. Frontiers in Earth Science [Internet]. 2019 ;7. Available from: https://www.frontiersin.org/articles/10.3389/feart.2019.00260/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Most assessments of coastal vulnerability are undertaken from the perspective of the risk posed to humans, their property and activities. This anthropocentric view is based on widespread public perception (a) that coastal change is primarily a hazard to property and infrastructure and (b) that sea defenses (whether soft or hard) are required to mitigate and eliminate coastal hazards. From the perspective of coastal ecosystems, such a view is both perverse and damaging. In this paper we present an alternative approach to coastal assessment that centers on the physical integrity of the coast and its associated ecosystems both now and in the near-future. The shoreline health approach represents a new paradigm for coastal management and is intended to provide a much-needed ecosystem perspective. Its premise is to categorize coasts on the degree to which their ability to function morphodynamically has been compromised by human intervention. We present an expert assessment approach involving five categories that range from “Good Health” (with “Health Warning” and “Minor Wounds” sub-divisions), through “Minor Injury,” “Major Injury,” “On Life Support” to “Deceased.” We illustrate the concept using tabulated examples of each category from cliffed, clastic and delta coasts and demonstrate its utility through two applications. This approach has the potential to quantify the degree to which coastal ecosystems have been damaged and to focus attention on the cumulative impact of human activities on coastal ecosystems.

Introduction: An empirical framework for deconstructing the realities of governing marine protected areas

Jones PJS, De Santo EM, Qiu W, Vestergaard O. Introduction: An empirical framework for deconstructing the realities of governing marine protected areas. Marine Policy [Internet]. 2013 ;41:1 - 4. Available from: https://www.sciencedirect.com/science/article/pii/S0308597X12002667
Freely available?: 
Yes
Summary available?: 
No
Approximate cost to purchase or rent this item from the publisher: 
US $35.95
Type: Journal Article

Debates surrounding governance strategies for marine protected areas (MPAs) have to date largely focused on top-down, bottom-up or market-based approaches. Whilst co-management approaches for governing MPAs are widely accepted as a way forward for combining these three strategies, many interpretations of this concept exist and it is applied in many different ways in MPAs in different contexts. This study aimed to explore governance through a case-study approach based on a specifically developed empirical framework – the marine protected area governance (MPAG) analysis framework – to increase understanding of how to combine the three governance approaches. A dialogue with MPA practitioners in 20 case studies helped shape the MPAG analysis framework as it developed, and an international workshop was held on ‘Governing MPAs’, bringing the practitioners together to compare results and further develop the framework. This paper provides an overview of the topic and research methodology and briefly introduces the case studies further explored in this special issue.

Aerial-trained deep learning networks for surveying cetaceans from satellite imagery

Borowicz A, Le H, Humphries G, Nehls G, Höschle C, Kosarev V, Lynch HJ. Aerial-trained deep learning networks for surveying cetaceans from satellite imagery Pławiak P. PLOS ONE [Internet]. 2019 ;14(10):e0212532. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0212532
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Most cetacean species are wide-ranging and highly mobile, creating significant challenges for researchers by limiting the scope of data that can be collected and leaving large areas un-surveyed. Aerial surveys have proven an effective way to locate and study cetacean movements but are costly and limited in spatial extent. Here we present a semi-automated pipeline for whale detection from very high-resolution (sub-meter) satellite imagery that makes use of a convolutional neural network (CNN). We trained ResNet, and DenseNet CNNs using down-scaled aerial imagery and tested each model on 31 cm-resolution imagery obtained from the WorldView-3 sensor. Satellite imagery was tiled and the trained algorithms were used to classify whether or not a tile was likely to contain a whale. Our best model correctly classified 100% of tiles with whales, and 94% of tiles containing only water. All model architectures performed well, with learning rate controlling performance more than architecture. While the resolution of commercially-available satellite imagery continues to make whale identification a challenging problem, our approach provides the means to efficiently eliminate areas without whales and, in doing so, greatly accelerates ocean surveys for large cetaceans.

Fisheries governance in the face of climate change: Assessment of policy reform implications for Mexican fisheries

Cisneros-Mata MÁngel, Mangin T, Bone J, Rodriguez L, Smith SLindley, Gaines SD. Fisheries governance in the face of climate change: Assessment of policy reform implications for Mexican fisheries Belgrano A. PLOS ONE [Internet]. 2019 ;14(10):e0222317. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0222317
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Climate change is driving shifts in the abundance and distribution of marine fish and invertebrates and is having direct and indirect impacts on seafood catches and fishing communities, exacerbating the already negative effects of unsustainably high fishing pressure that exist for some stocks. Although the majority of fisheries in the world are managed at the national or local scale, most existing approaches to assessing climate impacts on fisheries have been developed on a global scale. It is often difficult to translate from the global to regional and local settings because of limited relevant data. To address the need for fisheries management entities to identify those fisheries with the greatest potential for climate change impacts, we present an approach for estimating expected climate change-driven impacts on the productivity and spatial range of fisheries at the regional scale in a data-poor context. We use a set of representative Mexican fisheries as test cases. To assess the implications of climate impacts, we compare biomass, harvest, and profit outcomes from a bioeconomic model under contrasting management policies and with and without climate change. Overall results show that climate change is estimated to negatively affect nearly every fishery in our study. However, the results indicate that overfishing is a greater threat than climate change for these fisheries, hence fixing current management challenges has a greater upside than the projected future costs of moderate levels of climate change. Additionally, this study provides meaningful first approximations of potential effects of both climate change and management reform in Mexican fisheries. Using the climate impact estimations and model outputs, we identify high priority stocks, fleets, and regions for policy reform in Mexico in the face of climate change. This approach can be applied in other data-poor circumstances to focus future research and policy reform efforts on stocks now subject to additional stress due to climate change. Considering their growing relevance as a critical source of protein and micronutrients to nourish our growing population, it is urgent for regions to develop sound fishery management policies in the short-term as they are the most important intervention to mitigate the adverse effects of climate change on marine fisheries.

Fishery Improvement Projects as a governance tool for fisheries sustainability: A global comparative analysis

Crona B, Käll S, Van Holt T. Fishery Improvement Projects as a governance tool for fisheries sustainability: A global comparative analysis Villamayor-Tomas S. PLOS ONE [Internet]. 2019 ;14(10):e0223054. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0223054
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Fishery Improvement Projects (FIPs) are a form of private governance using seafood supply chains to reduce environmental impacts of fishing in some of the most challenged fisheries. Some FIPs are industry-led, others are championed by NGOs. They range across many different fishery types, in both high- and low-income settings. Their diversity is notable, and their proliferation remarkable. This rapid growth suggests FIPs are becoming a key feature of the fisheries governance landscape globally. Based on a global sample of 107 FIPs, we systematically examined their reported actions, the actors involved, and their achievements in terms of policy and practice outputs. The most common actions were dialogues with policy stakeholders, data collection, and educational efforts directed at fishers. Common policy outputs included development of management plans and/or a management body, and rules for limiting entry and increasing compliance. Practice related outputs were dominated by gear changes, and observer and traceability programs. Only crab and lobster FIPs engaged in sustained policy conversations as one of the most common actions. Shrimp and tuna fisheries report more engagement in testing and implementing changes to fishery practices. While supply chain actors are involved in all FIPs, retailers and 1st tier suppliers are relatively absent from FIP activities, and are primarily involved in rallying financial support or some policy engagement. Based on our analysis we discuss the opportunities and challenges FIPs will likely need to engage with to contribute to a global transition to more socially and environmentally sustainable fisheries. We outline key areas where further work is needed to understand how FIPs can improve their contribution to global fisheries governance in the future.

Coralline algal calcification: A morphological and process-based understanding

Nash MC, Diaz-Pulido G, Harvey AS, Adey W. Coralline algal calcification: A morphological and process-based understanding Melzner F. PLOS ONE [Internet]. 2019 ;14(9):e0221396. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0221396
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Research purpose and findings

 

Coralline algae are key biological substrates of many carbonate systems globally. Their capacity to build enduring crusts that underpin the formation of tropical reefs, rhodolith beds and other benthic substrate is dependent on the formation of a calcified thallus. However, this important process of skeletal carbonate formation is not well understood. We undertook a study of cellular carbonate features to develop a model for calcification. We describe two types of cell wall calcification; 1) calcified primary cell wall (PCW) in the thin-walled elongate cells such as central medullary cells in articulated corallines and hypothallial cells in crustose coralline algae (CCA), 2) calcified secondary cell wall (SCW) with radial Mg-calcite crystals in thicker-walled rounded cortical cells of articulated corallines and perithallial cells of CCA. The distinctive banding found in many rhodoliths is the regular transition from PCW-only cells to SCW cells. Within the cell walls there can be bands of elevated Mg with Mg content of a few mol% higher than radial Mg-calcite (M-type), ranging up to dolomite composition (D-type).

 

Model for calcification

 

We propose the following three-step model for calcification. 1) A thin (< 0.5 μm) PCW forms and is filled with a mineralising fluid of organic compounds and seawater. Nanometer-scale Mg-calcite grains precipitate on the organic structures within the PCW. 2) Crystalline cellulose microfibrils (CMF) are extruded perpendicularly from the cellulose synthase complexes (CSC) in the plasmalemma to form the SCW. 3) The CMF soaks in the mineralising fluid as it extrudes and becomes calcified, retaining the perpendicular form, thus building the radial calcite. In Clathromorphum, SCW formation lags PCW creating a zone of weakness resulting in a split in the sub-surface crust. All calcification seems likely to be a bioinduced rather than controlled process. These findings are a substantial step forward in understanding how corallines calcify.

Projected declines in global DHA availability for human consumption as a result of global warming

Colombo SM, Rodgers TFM, Diamond ML, Bazinet RP, Arts MT. Projected declines in global DHA availability for human consumption as a result of global warming. Ambio [Internet]. 2019 . Available from: http://link.springer.com/10.1007/s13280-019-01234-6
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Docosahexaenoic acid (DHA) is an essential, omega-3, long-chain polyunsaturated fatty acid that is a key component of cell membranes and plays a vital role in vertebrate brain function. The capacity to synthesize DHA is limited in mammals, despite its critical role in neurological development and health. For humans, DHA is most commonly obtained by eating fish. Global warming is predicted to reduce the de novo synthesis of DHA by algae, at the base of aquatic food chains, and which is expected to reduce DHA transferred to fish. We estimated the global quantity of DHA (total and per capita) currently available from commercial (wild caught and aquaculture) and recreational fisheries. The potential decrease in the amount of DHA available from fish for human consumption was modeled using the predicted effect of established global warming scenarios on algal DHA production and ensuing transfer to fish. We conclude that an increase in water temperature could result, depending on the climate scenario and location, in a ~ 10 to 58% loss of globally available DHA by 2100, potentially limiting the availability of this critical nutrient to humans. Inland waters show the greatest potential for climate-warming-induced decreases in DHA available for human consumption. The projected decrease in DHA availability as a result of global warming would disproportionately affect vulnerable populations (e.g., fetuses, infants), especially in inland Africa (due to low reported per capita DHA availability). We estimated, in the worst-case scenario, that DHA availability could decline to levels where 96% of the global population may not have access to sufficient DHA.

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