Freely-available Literature

Currently indexing 2955 freely-available titles

The following titles are freely-available, or include a link to a preprint or postprint.

Method for the quantitative evaluation of ecosystem services in coastal regions

Okada T, Mito Y, Iseri E, Takahashi T, Sugano T, Akiyama YB, Watanabe K, Tanaya T, Sugino H, Tokunaga K, et al. Method for the quantitative evaluation of ecosystem services in coastal regions. PeerJ [Internet]. 2019 ;6:e6234. Available from: https://peerj.com/articles/6234
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Wetlands, tidal flats, seaweed beds, and coral reefs are valuable not only as habitats for many species, but also as places where people interact with the sea. Unfortunately, these areas have declined in recent years, so environmental improvement projects to conserve and restore them are being carried out across the world. In this study, we propose a method for quantifying ecosystem services, that is, useful for the proper maintenance and management of artificial tidal flats, a type of environmental improvement project. With this method, a conceptual model of the relationship between each service and related environmental factors in natural and social systems was created, and the relationships between services and environmental factors were clarified. The state of the environmental factors affecting each service was quantified, and the state of those factors was reflected in the evaluation value of the service. As a result, the method can identify which environmental factors need to be improved and if the goal is to increase the value of the targeted tidal flat. The method demonstrates an effective approach in environmental conservation for the restoration and preservation of coastal areas.

Maritime Spatial Planning

Zaucha J, Gee K eds. Maritime Spatial Planning. Cham: Springer International Publishing; 2019. Available from: http://link.springer.com/10.1007/978-3-319-98696-8
Freely available?: 
Yes
Summary available?: 
No
Type: Book

Over the last 20 years, marine/maritime spatial planning (MSP)1 has gained a strong political presence in Europe and elsewhere. Before 2006, only a hand- ful of countries had begun to spatially plan sea areas, such as China, where marine functional zoning was first proposed by government in 1998. In Europe, efforts began in 2002 as part of the EU-funded BaltCoast project involving Germany, Sweden, Estonia, Poland, Latvia, Denmark and Finland. Belgium, Germany and the Netherlands then became forerunners of MSP in Europe, approving integrated management plans for their waters in 2005. By 2017, the number of countries with MSP initiatives of some type had grown to about 60, the majority of which are in Europe but also some in Central America, Africa and Asia (Ehler 2017; Santos et al. 2019).2

Incorporation of Feed and Fecal Waste From Salmon Aquaculture in Great Scallops (Pecten maximus) Co-fed by Different Algal Concentrations

Bergvik M, Stensås L, Handå A, Reitan KInge, Strand Ø, Olsen Y. Incorporation of Feed and Fecal Waste From Salmon Aquaculture in Great Scallops (Pecten maximus) Co-fed by Different Algal Concentrations. Frontiers in Marine Science [Internet]. 2019 ;5. Available from: https://www.frontiersin.org/article/10.3389/fmars.2018.00524/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Juvenile scallops of Pecten maximus were studied to see the capability to clear out and incorporate salmon feed and feces (30 μg L-1). Algae were also given, in a low and high concentration in addition to feed and feces, to mimic a winter and summer situation in Norwegian waters. Rhodomonas baltica and Chaetoseris muelleri were provided in a concentration of 50 μg L-1 and 300 μg L-1. The feeding trial lasted for 27 days. Clearance rate was measured to study filtration characteristics, while fatty acid profiling and stable isotopes of nitrogen and carbon were used to trace the uptake of salmon feed and feces in the digestive gland and muscle of juvenile scallops (30–35 mm shell height). The results show that the scallops could clear out and retain both salmon feed and feces particles, although at a statistically lower clearance rate than the algae. Fatty acid profiling revealed that the scallops assimilated and incorporated the consumed salmon feed and feces, given with either high or low algae concentrations, in their tissues, where the fatty acid C18:1n9 was used as a tracer fatty acid. The digestive gland of the scallops that were fed salmon feed and feces contained a higher share of C18:1n9 than those that were only fed algae. The digestive gland reflected the fatty acid composition of the diet, while the fatty acid composition of the muscle, which also changed, reflected a more complex relation between diet and metabolic processes in the tissue. The use of stable isotopes of carbon and nitrogen to trace food sources was inconclusive in this study due to low differences between samples fed different feeds. Fatty acid profiling was a more sensitive method for tracing low concentrations of salmon feed and feces in the algae diet of scallops. Our results suggest that P. maximus could be a candidate for integrated multitrophic aquaculture (IMTA) and that scallops have the potential to utilize small particles of wasted salmon feed and feces during a winter situation with low phytoplankton concentration and during an algal bloom in Norwegian waters.

Coral Reef Degradation Differentially Alters Feeding Ecology of Co-occurring Congeneric Spiny Lobsters

Briones-Fourzán P, Alvarez-Filip L, Barradas-Ortíz C, Morillo-Velarde PS, Negrete-Soto F, Segura-García I, Sánchez-González A, Lozano-Álvarez E. Coral Reef Degradation Differentially Alters Feeding Ecology of Co-occurring Congeneric Spiny Lobsters. Frontiers in Marine Science [Internet]. 2019 ;5. Available from: https://www.frontiersin.org/article/10.3389/fmars.2018.00516/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Caribbean coral reefs are undergoing massive degradation, with local increases of macroalgae and reduction of architectural complexity associated with loss of reef-building corals. We explored whether reef degradation affects the feeding ecology of two co-occurring spiny lobsters: Panulirus guttatus, which is an obligate reef-dweller, and Panulirus argus, which uses various benthic habitats including coral reefs. We collected lobsters of both species from the back-reef zones of two large reefs similar in length (∼1.5 km) but differing widely in level of degradation, at the Puerto Morelos Reef National Park (Mexico). We measured the carapace length (CL) and weight (W) of lobsters, estimated three condition indices (hepatosomatic index, HI; blood refractive index, BRI; and W/CL ratio), and analyzed their stomach contents and stable isotope values (δ15N and δ13C). All lobsters tested negative for the presence of the virus PaV1, which can affect nutritional condition. Stomach contents yielded 72 animal taxa, mainly mollusks and crustaceans, with an average of 35 taxa per species per reef, but with much overlap. In P. guttatus, CL, HI, BRI, and W/CL did not vary with reef, but mean isotopic values did. The isotopic niche of P. guttatus showed little overlap between reefs, reflecting differences in local carbon sources and underlining the habitat specialization of P. guttatus, which exhibited a higher trophic position on the more degraded reef. Overall, the trophic position of P. guttatus was higher than that of P. argus. In P. argus, none of the variables differed between reefs and the isotopic niche was wide and with great overlap between reefs, reflecting the broader foraging ranges of P. argus compared to P. guttatus. Additional isotopic values from 16 P. arguscaught at a depth of 25 m in the fore reef suggest that these larger lobsters forage over different habitats and have a higher trophic position than their smaller conspecifics and congeners from the back reef. The feeding ecology of P. argus appears to be less influenced by coral reef degradation than that of P. guttatus, but our results suggest a buffering effect of omnivory against habitat degradation for both lobster species.

Corallivory in the Anthropocene: Interactive Effects of Anthropogenic Stressors and Corallivory on Coral Reefs

Rice MM, Ezzat L, Burkepile DE. Corallivory in the Anthropocene: Interactive Effects of Anthropogenic Stressors and Corallivory on Coral Reefs. Frontiers in Marine Science [Internet]. 2019 ;5. Available from: https://www.frontiersin.org/article/10.3389/fmars.2018.00525/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Corallivory is the predation of coral mucus, tissue, and skeleton by fishes and invertebrates, and a source of chronic stress for many reef-building coral species. Corallivores often prey on corals repeatedly, and this predation induces wounds that require extensive cellular resources to heal. The effects of corallivory on coral growth, reproduction, and community dynamics are well-documented, and often result in reduced growth rates and fitness. Given the degree of anthropogenic pressures that threaten coral reefs, it is now imperative to focus on understanding how corallivory interacts with anthropogenic forces to alter coral health and community dynamics. For example, coral bleaching events that stem from global climate change often reduce preferred corals species for many corallivorous fishes. These reductions in preferred prey may result in declines in populations of more specialized corallivores while more generalist corallivores may increase. Corallivory may also make corals more susceptible to thermal stress and exacerbate bleaching. At local scales, overfishing depletes corallivorous fish stocks, reducing fish corallivory and bioerosion, whilst removing invertivorous fishes and allowing population increases in invertebrate corallivores (e.g., urchins, Drupella spp.). Interactive effects of local stressors, such as overfishing and nutrient pollution, can alter the effect of corallivory by increasing coral-algal competition and destabilizing the coral microbiome, subsequently leading to coral disease and mortality. Here, we synthesize recent literature of how global climate change and local stressors affect corallivore populations and shape the patterns and effect of corallivory. Our review indicates that the combined effects of corallivory and anthropogenic pressures may be underappreciated and that these interactions often drive changes in coral reefs on scales from ecosystems to microbes. Understanding the ecology of coral reefs in the Anthropocene will require an increased focus on how anthropogenic forcing alters biotic interactions, such as corallivory, and the resulting cascading effects on corals and reef ecosystems.

Lessons Learned From the United States Ocean Observatories Initiative

Smith LM, Yarincik K, Vaccari L, Kaplan MB, Barth JA, Cram GS, Fram JP, Harrington M, Kawka OE, Kelley DS, et al. Lessons Learned From the United States Ocean Observatories Initiative. Frontiers in Marine Science [Internet]. 2019 ;5. Available from: https://www.frontiersin.org/article/10.3389/fmars.2018.00494/full
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The Ocean Observatories Initiative (OOI) is a United States National Science Foundation-funded major research facility that provides continuous observations of the ocean and seafloor from coastal and open ocean locations in the Atlantic and Pacific. Multiple cycles of OOI infrastructure deployment, recovery, and refurbishment have occurred since operations began in 2014. This heterogeneous ocean observing infrastructure with multidisciplinary sampling in important but challenging locations has provided new scientific and engineering insights into the operation of a sustained ocean observing system. This paper summarizes the challenges, successes, and failures experienced to date and shares recommendations on best practices that will be of benefit to the global ocean observing community.

The shifting distribution of Mediterranean fishes: a spatio-temporal assessment based on Local Ecological Knowledge

Cerri J. The shifting distribution of Mediterranean fishes: a spatio-temporal assessment based on Local Ecological Knowledge. [Internet]. 2019 . Available from: https://marxiv.org/zgupd/
Freely available?: 
Yes
Summary available?: 
No
Type: Manuscript

A major problem worldwide is the rapid change in species abundance and distribution, which is rapidly restructuring the biological communities of many ecosystems under changing climates. Tracking these transformations in the marine environment is crucial but our understanding is often hampered by the absence of historical data and by the practical challenge of survey large geographical areas. Here we focus on the Mediterranean Sea, a region which is warming faster than the rest of the global ocean, tracing back the spatio-temporal dynamic of species, which are emerging the most in terms of increasing abundances and expanding distributions. To this aim, we accessed the Local Ecological Knowledge (LEK) of small-scale and recreational fishers reconstructing the dynamics of fish perceived as ‘new’ or increasing in different fishing area. Over 500 fishers across 95 locations and 9 different countries were interviewed and semi-quantitative information on yearly changes in species abundance was collected. Overall, 75 species were mentioned by the respondents, being the most frequent citations related to warm-adapted species of both, native and exotic origin. Respondents belonging to the same biogeographic sectors described coherent spatio-temporal dynamics, and gradients along latitudinal and longitudinal axes were revealed. This information provides a more complete understanding of recent bio-geographical changes in the Mediterranean Sea and it also demonstrates that adequately structured LEK methodology might be applied successfully beyond the local scale, across national borders and jurisdictions. Acknowledging this potential through macro-regional coordination, could pave the ground for future large-scale aggregations of individual observations, increasing our potential for integrated monitoring and conservation planning at the regional or even global level.

Drones for Conservation in Protected Areas: Present and Future

López JJiménez, Mulero-Pázmány M. Drones for Conservation in Protected Areas: Present and Future. Drones [Internet]. 2019 ;3(1):10. Available from: https://www.mdpi.com/2504-446X/3/1/10
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Park managers call for cost-effective and innovative solutions to handle a wide variety of environmental problems that threaten biodiversity in protected areas. Recently, drones have been called upon to revolutionize conservation and hold great potential to evolve and raise better-informed decisions to assist management. Despite great expectations, the benefits that drones could bring to foster effectiveness remain fundamentally unexplored. To address this gap, we performed a literature review about the use of drones in conservation. We selected a total of 256 studies, of which 99 were carried out in protected areas. We classified the studies in five distinct areas of applications: “wildlife monitoring and management”; “ecosystem monitoring”; “law enforcement”; “ecotourism”; and “environmental management and disaster response”. We also identified specific gaps and challenges that would allow for the expansion of critical research or monitoring. Our results support the evidence that drones hold merits to serve conservation actions and reinforce effective management, but multidisciplinary research must resolve the operational and analytical shortcomings that undermine the prospects for drones integration in protected areas.

Stronger together: Strategies to protect local sovereignty, ecosystems, and place-based communities from the global fossil fuel trade

Allen M, Bird S, Breslow S, Dolšak N. Stronger together: Strategies to protect local sovereignty, ecosystems, and place-based communities from the global fossil fuel trade. Marine Policy [Internet]. 2017 ;80:168 - 176. Available from: https://www.sciencedirect.com/science/article/pii/S0308597X16306704
Freely available?: 
Yes
Summary available?: 
No
Approximate cost to purchase or rent this item from the publisher: 
US $35.95
Type: Journal Article

In the Pacific Northwest, residents are mobilizing to prevent the coastal export of fossil fuels and protect unique ecosystems and place-based communities. This paper examines the diverse groups, largely from the Bellingham area, and how they succeeded in blocking construction of what was to be the largest coal-shipping port in North America, the Gateway Pacific Terminal (GPT). Tribes, environmental organizations, faith-based groups, and other citizen groups used a multitude of approaches to prevent development, both independently and in concert. This paper reviews the various ways in which the groups collaborated and supported one another to resist the neoliberalization of the coast and support local sovereignty, unique ecosystems, and place-based communities. Groups like Power Past Coal, Protect Whatcom, and Coal-Free Bellingham fought for important and protective changes and evidenced communitywide political support, but the sovereign rights of the Lummi Nation were the legal bar to constructing the coal terminal.

Song variation of the South Eastern Indian Ocean pygmy blue whale population in the Perth Canyon, Western Australia

Jolliffe CD, McCauley RD, Gavrilov AN, K. Jenner CS, Jenner M-NM, Duncan AJ. Song variation of the South Eastern Indian Ocean pygmy blue whale population in the Perth Canyon, Western Australia Matsumoto H. PLOS ONE [Internet]. 2019 ;14(1):e0208619. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0208619
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Sea noise collected over 2003 to 2017 from the Perth Canyon, Western Australia was analysed for variation in the South Eastern Indian Ocean pygmy blue whale song structure. The primary song-types were: P3, a three unit phrase (I, II and III) repeated with an inter-song interval (ISI) of 170–194 s; P2, a phrase consisting of only units II & III repeated every 84–96 s; and P1 with a phrase consisting of only unit II repeated every 45–49 s. The different ISI values were approximate multiples of each other within a season. When comparing data from each season, across seasons, the ISI value for each song increased significantly through time (all fits had p<< 0.001), at 0.30 s/Year (95%CI 0.217–0.383), 0.8 s/Year (95%CI 0.655–1.025) and 1.73 s/Year (95%CI 1.264–2.196) for the P1, P2 and P3 songs respectively. The proportions of each song-type averaged at 21.5, 24.2 and 56% for P1, P2 and P3 occurrence respectively and these ratios could vary by up to ± 8% (95% CI) amongst years. On some occasions animals changed the P3 ISI to be significantly shorter (120–160 s) or longer (220–280 s). Hybrid song patterns occurred where animals combined multiple phrase types into a repeated song. In recent years whales introduced further complexity by splitting song units. This variability of song-type and proportions implies abundance measure for this whale sub population based on song detection needs to factor in trends in song variability to make data comparable between seasons. Further, such variability in song production by a sub population of pygmy blue whales raises questions as to the stability of the song types that are used to delineate populations. The high level of song variability may be driven by an increasing number of background whale callers creating ‘noise’ and so forcing animals to alter song in order to ‘stand out’ amongst the crowd.

Sociocultural heterogeneity in a common pool resource dilemma

Gehrig S, Schlüter A, Hammerstein P. Sociocultural heterogeneity in a common pool resource dilemma Bauch CT. PLOS ONE [Internet]. 2019 ;14(1):e0210561. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0210561
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Collective action of resource users is essential for sustainability. Yet, often user groups are socioculturally heterogeneous, which requires cooperation to be established across salient group boundaries. We explore the effect of this type of heterogeneity on resource extraction in lab-in-the-field Common Pool Resource (CPR) experiments in Zanzibar, Tanzania. We create heterogeneous groups by mixing fishers from two neighbouring fishing villages which have distinct social identities, a history of conflict and diverging resource use practices and institutions. Additionally, we analyse between-village differences in extraction behaviour in the heterogeneous setting to assess if out-group cooperation in a CPR dilemma is associated with a community’s institutional scope in the economic realm (e.g., degree of market integration). We find no aggregate effect of heterogeneity on extraction. However, this is because fishers from the two villages behave differently in the heterogeneity treatment. We find support for the hypothesis that cooperation under sociocultural heterogeneity is higher for fishers from the village with larger institutional scope. In line with this explanation, cooperation under heterogeneity also correlates with a survey measure of individual fishers’ radius of trust. We discuss implications for resource governance and collective action research.

Marine mammals and sea turtles listed under the U.S. Endangered Species Act are recovering

Valdivia A, Wolf S, Suckling K. Marine mammals and sea turtles listed under the U.S. Endangered Species Act are recovering Hays G. PLOS ONE [Internet]. 2019 ;14(1):e0210164. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0210164
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The U.S. Endangered Species Act (ESA) is a powerful environmental law protecting imperiled plants and animals, and a growing number of marine species have been protected under this law as extinction risk in the oceans has increased. Marine mammals and sea turtles comprise 38% of the 163 ESA-listed marine “species”, which includes subspecies and distinct population segments, yet analyses of recovery trends after listing are lacking. Here we gathered the best available annual abundance estimates for geographically delimited populations of all 62 marine mammal and sea turtle species listed under the ESA. Of these, we chose representative populations of species that were listed before 2012, occur and reproduce in U.S. waters, and have data of sufficient quality and timespan for trend analyses. Thus, we quantitatively analyzed population trends, magnitude of population change, and recovery status for 23 and 8 representative populations of 14 marine mammal and 5 sea turtle species, respectively. Using generalized linear and non-linear models, we found that 18 marine mammal (78%) and 6 sea turtle (75%) populations significantly increased after listing; 3 marine mammal (13%) and 2 sea turtle (25%) populations showed non-significant changes; while 2 marine mammal (9%), but no sea turtle populations declined after ESA protection. Overall, the 24 populations that increased in abundance were from species listed for 20 years or more (e.g., large whales, manatees, and sea turtles). Conservation measures triggered by ESA listing such as ending exploitation, tailored species management, and fishery regulations, and other national and international measures, appear to have been largely successful in promoting species recovery, leading to the delisting of some species and to increases in most populations. These findings underscore the capacity of marine mammal and sea turtle species to recover from substantial geographical population declines when conservation actions are implemented in a timely and effective manner.

Fisheries management in the face of uncertainty: Designing time-area closures that are effective under multiple spatial patterns of fishing effort displacement in an estuarine gill net fishery

Hoos LA, Buckel JA, Boyd JB, Loeffler MS, Lee LM. Fisheries management in the face of uncertainty: Designing time-area closures that are effective under multiple spatial patterns of fishing effort displacement in an estuarine gill net fishery Januchowski-Hartley FAndrew. PLOS ONE [Internet]. 2019 ;14(1):e0211103. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0211103
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

A commonly cited reason for the failure of time-area closures to achieve fisheries management goals is the displacement of fishing effort from inside the closure into the surrounding area still open to fishing. Designing time-area closures that are predicted to achieve management goals under multiple spatial patterns of effort redistribution will increase chances of success. Using data from an estuarine gill net fishery, we tested if there are time-area closures predicted to reduce bycatch of two protected species groups while maintaining target catch under four simulated effort redistribution patterns. We found that the pattern of effort redistribution had a substantial impact on the amount of predicted bycatch in each closure scenario. Multiple closures were predicted to reduce bycatch of these species under all four simulations of effort redistribution. However, some combinations of closure and effort redistribution pattern resulted in estimated bycatch being higher than without a closure. We did not find any time-area closures that resulted in a predicted reduction in bycatch while maintaining target catch at original levels. We demonstrate a simple way for fisheries managers to account for the uncertainty in fishers' behavior by designing time-area closures that are predicted to reduce bycatch under multiple potential patterns of spatial redistribution of fishing effort.

An ecosystem-based risk assessment for California fisheries co-developed by scientists, managers, and stakeholders

Samhouri JF, Ramanujam E, Bizzarro JJ, Carter H, Sayce K, Shen S. An ecosystem-based risk assessment for California fisheries co-developed by scientists, managers, and stakeholders. Biological Conservation [Internet]. 2019 ;231:103 - 121. Available from: https://www.sciencedirect.com/science/article/pii/S0006320718302696
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The intensive harvest of wild populations for food can pose a risk to food security and to conservation goals. While ecosystem approaches to management offer a potential means to balance those risks, they require a method of assessment that is commensurate across multiple objectives. A major challenge is conducting these assessments in a way that considers the priorities and knowledge of stakeholders. In this study, we co-developed an ecological risk assessment (ERA) for fisheries in California (USA) with scientists, managers, and stakeholders. This ERA was intended to meet the requirements of existing policy mandates in the state of California and provide a systematic, efficient, and transparent approach to prioritize fisheries for additional management actions, including the development of fisheries management plans fully compliant with California laws. We assessed the relative risk posed to target species, bycatch, and habitats from nine state-managed fisheries and found risk to target species was not necessarily similar to risks to bycatch and habitat groups. In addition, no single fishery consistently presented the greatest risk for all bycatch or habitat groups. However, considered in combination, the greatest risk for target species, bycatch groups, and habitats emerged from two commercial fisheries for California halibut. The participatory process used to generate these results offers the potential to increase stakeholders' trust in the assessment and therefore its application in management. We suggest that adopting similar processes in other management contexts and jurisdictions will advance progress toward ecosystem-based fisheries management that simultaneously satisfies fisheries, conservation, and relationship-building objectives.

Capture and simulation of the ocean environment for offshore renewable energy

Draycott S, Sellar B, Davey T, Noble DR, Venugopal V, Ingram DM. Capture and simulation of the ocean environment for offshore renewable energy. Renewable and Sustainable Energy Reviews [Internet]. 2019 ;104:15 - 29. Available from: https://www.sciencedirect.com/science/article/pii/S1364032119300115
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The offshore renewable energy sector has challenging requirements related to the physical simulation of the ocean environment for the purpose of evaluating energy generating technologies. In this paper the demands of the wave and tidal energy sectors are considered, with measurement and characterisation of the environment explored and replication of these conditions described. This review examines the process of advanced ocean environment replication from the sea to the tank, and rather than an exhaustive overview of all approaches it follows the rationale behind projects led, or strongly connected to, the late Professor Ian Bryden. This gives an element of commonality to the motivations behind marine data acquisition programmes and the facilities constructed to take advantage of the resulting datasets and findings. This review presents a decade of flagship research, conducted in the United Kingdom, at the interfaces between physical oceanography, engineering simulation tools and industrial applications in the area of offshore renewable energy. Wave and tidal datasets are presented, with particular emphasis on the novel tidal measurement techniques developed for tidal energy characterisation in the Fall of Warness, Orkney, UK. Non-parametric wave spectra characterisation methodologies are applied to the European Marine Energy Centre's (EMEC) Billia Croo wave test site, giving complex and highly realistic site-specific directional inputs for simulation of wave energy sites and converters. Finally, the processes of recreating the resulting wave, tidal, and combined wave-current conditions in the FloWave Ocean Energy Research Facility are presented. The common motivations across measurement, characterisation, and test tank are discussed with conclusions drawn on the strengths, gaps and challenges associated with detailed site replication.

Metabarcoding and machine learning analysis of environmental DNA in ballast water arriving to hub ports

Gerhard WA, Gunsch CK. Metabarcoding and machine learning analysis of environmental DNA in ballast water arriving to hub ports. Environment International [Internet]. 2019 ;124:312 - 319. Available from: https://www.sciencedirect.com/science/article/pii/S0160412018324115
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

While ballast water has long been linked to the global transport of invasive species, little is known about its microbiome. Herein, we used 16S rRNA gene sequencing and metabarcoding to perform the most comprehensive microbiological survey of ballast water arriving to hub ports to date. In total, we characterized 41 ballast, 20 harbor, and 6 open ocean water samples from four world ports (Shanghai, China; Singapore; Durban, South Africa; Los Angeles, California). In addition, we cultured Enterococcus and E. coli to evaluate adherence to International Maritime Organization standards for ballast discharge. Five of the 41 vessels – all of which were loaded in China – did not comply with standards for at least one indicator organism. Dominant bacterial taxa of ballast water at the class level were Alphaproteobacteria, Gammaproteobacteria, and Bacteroidia. Ballast water samples were composed of significantly lower proportions of Oxyphotobacteria than either ocean or harbor samples. Linear discriminant analysis (LDA) effect size (LEfSe) and machine learning were used to identify and test potential biomarkers for classifying sample types (ocean, harbor, ballast). Eight candidate biomarkers were used to achieve 81% (k nearest neighbors) to 88% (random forest) classification accuracy. Further research of these biomarkers could aid the development of techniques to rapidly assess ballast water origin.

Data mining on YouTube reveals fisher group-specific harvesting patterns and social engagement in recreational anglers and spearfishers

Sbragaglia V, Correia RA, Coco S, Arlinghaus R. Data mining on YouTube reveals fisher group-specific harvesting patterns and social engagement in recreational anglers and spearfishers. [Internet]. 2019 . Available from: https://marxiv.org/fd9yh/
Freely available?: 
Yes
Summary available?: 
No
Type: Manuscript

Data about recreational fisheries are scarce in many areas of the world. In the absence of monitoring data collected in situ, alternative data sources, such as digital applications and social media platforms, have the potential to produce valuable insights. Yet, the potential of social media for drawing insights about recreational fisheries is still underexplored. In this study, we applied data mining on YouTube videos to better understand recreational fisheries targeting common dentex (Dentex dentex), an iconic species of Mediterranean recreational fisheries. We chose this model species because of ongoing controversies about the relative impact of recreational angling and recreational spearfishing on its conservation status. In Italy alone, from 2010 to 2016 recreational spearfishers posted 1051 videos compared to 692 videos posted by recreational anglers. Only the upload pattern of spearfishing videos followed a seasonal pattern with peaks in July, suggesting seasonality of spearfishing catches of D. dentex – a trend not found for anglers. The average mass of the fish declared in recreational angling videos (6.43 kg) was significantly larger than the one in spearfishing videos (4.50 kg). Videos posted by recreational spearfishers received significantly more likes and comments than those posted by recreational anglers, suggesting that the social engagement among recreational spearfishers was stronger than in anglers. We also found that the mass of the fish positively predicted social engagement in recreational spearfishing videos, but not in videos posted by recreational anglers. This could be caused by the generally smaller odds of catching large D. dentex by spearfishing, possibly explaining why posting videos with particularly large specimen triggered larger social engagement by recreational spearfishers. Our case study demonstrates that data mining on YouTube can be a powerful tool to provide complementary data on controversial and data-poor aspects of recreational fisheries.

Current fossil fuel infrastructure does not yet commit us to 1.5 °C warming

Smith CJ, Forster PM, Allen M, Fuglestvedt J, Millar RJ, Rogelj J, Zickfeld K. Current fossil fuel infrastructure does not yet commit us to 1.5 °C warming. Nature Communications [Internet]. 2019 ;10(1). Available from: http://www.nature.com/articles/s41467-018-07999-w
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Committed warming describes how much future warming can be expected from historical emissions due to inertia in the climate system. It is usually defined in terms of the level of warming above the present for an abrupt halt of emissions. Owing to socioeconomic constraints, this situation is unlikely, so we focus on the committed warming from present-day fossil fuel assets. Here we show that if carbon-intensive infrastructure is phased out at the end of its design lifetime from the end of 2018, there is a 64% chance that peak global mean temperature rise remains below 1.5 °C. Delaying mitigation until 2030 considerably reduces the likelihood that 1.5 °C would be attainable even if the rate of fossil fuel retirement was accelerated. Although the challenges laid out by the Paris Agreement are daunting, we indicate 1.5 °C remains possible and is attainable with ambitious and immediate emission reduction across all sectors.

Granger-causality analysis of integrated-model outputs, a tool to assess external drivers in fishery

Rincón M, Corti R, Elvarsson B, Ramos F, Ruiz J. Granger-causality analysis of integrated-model outputs, a tool to assess external drivers in fishery. [Internet]. 2019 . Available from: https://marxiv.org/zn63y/
Freely available?: 
Yes
Summary available?: 
No
Type: Manuscript

Integrated models are able to combine several sources of data into a single analysis using joint likelihood functions, fostering the consistency of assumptions among analyses and the ability to diagnose goodness of fit and model-misspecification. Owing to their capacity to consistently combine diverse information, integrated models could detect the variability induced by external drivers, such as various environmental drivers, on key components of the stock dynamics (e.g. recruitment) in cases where these external drivers are relevant but not yet identified or incorporated into the modelling exercise. This diagnosing power could then be used to explore causality between fishery dynamics, as estimated by the integrated model, and external drivers. To achieve this aim, a correlation analysis is neither necessary nor sufficient to prove causation. An alternative statistical concept, Granger-causality, provides a framework that uses predictability, rather than correlation, to give more evidence of causation between time-series variables.

A two-step procedure to investigate external forcings in stock dynamics is proposed. First, an integrated model is implemented to detect anomalies that cannot be explained by the internal dynamics of the stock. Then, in a second step, Granger-causality is used to detect the external origin of these anomalies. This two-step procedure is explored using the European anchovy in the Gulf of Cádiz as an example population where the external (environmental) drivers are well documented. The fishery dynamics is first estimated through an age-length model (Gadget). Then Granger-causality is used to assess the predictive power of different environmental drivers on recruitment. The results indicate that this is a powerful procedure, although also with important limitations, to determine predictability and that it can be implemented in a wide variety of stocks and external drivers. Moreover, once Granger-causality has been identified, it is shown that it can be used to forecast by making few modifications of the integrated model used for diagnosis.

Feeding ecology of invasive lionfish (Pterois volitans and Pterois miles) in the temperate and tropical western Atlantic

Peake J, Bogdanoff AK, Layman CA, Castillo B, Reale-Munroe K, Chapman J, Dahl K, III WFPatters, Eddy C, Ellis RD, et al. Feeding ecology of invasive lionfish (Pterois volitans and Pterois miles) in the temperate and tropical western Atlantic. Biological Invasions [Internet]. 2018 ;20(9):2567 - 2597. Available from: https://link.springer.com/article/10.1007%2Fs10530-018-1720-5
Freely available?: 
Yes
Summary available?: 
No
Approximate cost to purchase or rent this item from the publisher: 
US $39.95
Type: Journal Article

Numerous location-based diet studies have been published describing different aspects of invasive lionfish (Pterois volitans and Pterois miles) feeding ecology, but there has been no synthesis of their diet composition and feeding patterns across regional gradients. 8125 lionfish stomachs collected from 10 locations were analyzed to provide a generalized description of their feeding ecology at a regional scale and to compare their diet among locations. Our regional data indicate lionfish in the western Atlantic are opportunistic generalist carnivores that consume at least 167 vertebrate and invertebrate prey species across multiple trophic guilds, and carnivorous fish and shrimp prey that are not managed fishery species and not considered at risk of extinction by the International Union for Conservation of Nature disproportionately dominate their diet. Correlations between lionfish size and their diet composition indicate lionfish in the western Atlantic transition from a shrimp-dominated diet to a fish-dominated diet through ontogeny. Lionfish total length (TL) (mm) was found to predict mean prey mass per stomach (g) by the following equation mean prey mass =0.0002*TL1.6391, which can be used to estimate prey biomass consumption from lionfish length-frequency data. Our locational comparisons indicate lionfish diet varies considerably among locations, even at the group (e.g., crab) and trophic guild levels. The Modified Index of Relative Importance developed specifically for this study, calculated as the frequency of prey a × the number of prey a, can be used in other diet studies to assess prey importance when prey mass data are not available. Researchers and managers can use the diet data presented in this study to make inference about lionfish feeding ecology in areas where their diet has yet to be described. These data can be used to guide research and monitoring efforts, and can be used in modeling exercises to simulate the potential effects of lionfish on marine food webs. Given the large variability in lionfish diet composition among locations, this study highlights the importance of continued location-based diet assessments to better inform local management activities.

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