Biodiversity

Spatially congruent sites of importance for global shark and ray biodiversity

Derrick DH, Cheok J, Dulvy NK. Spatially congruent sites of importance for global shark and ray biodiversity Halliday WDavid. PLOS ONE [Internet]. 2020 ;15(7):e0235559. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0235559
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Many important areas identified for conservation priorities focus on areas of high species richness, however, it is unclear whether these areas change depending on what aspect of richness is considered (e.g. evolutionary distinctiveness, endemicity, or threatened species). Furthermore, little is known of the extent of spatial congruency between biodiversity measures in the marine realm. Here, we used the distribution maps of all known marine sharks, rays, and chimaeras (class Chondrichthyes) to examine the extent of spatial congruency across the hotspots of three measures of species richness: total number of species, evolutionarily distinct species, and endemic species. We assessed the spatial congruency between hotspots considering all species, as well as on the subset of the threatened species only. We consider three definitions of hotspot (2.5%, 5%, and 10% of cells with the highest numbers of species) and three levels of spatial resolution (1°, 4°, and 8° grid cells). Overall, we found low congruency among all three measures of species richness, with the threatened species comprising a smaller subset of the overall species patterns irrespective of hotspot definition. Areas of congruency at 1° and 5% richest cells contain over half (64%) of all sharks and rays and occurred off the coasts of: (1) Northern Mexico Gulf of California, (2) USA Gulf of Mexico, (3) Ecuador, (4) Uruguay and southern Brazil, (5) South Africa, southern Mozambique, and southern Namibia, (6) Japan, Taiwan, and parts of southern China, and (7) eastern and western Australia. Coarsening resolution increases congruency two-fold for all species but remains relatively low for threatened measures, and geographic locations of congruent areas also change. Finally, for pairwise comparisons of biodiversity measures, evolutionarily distinct species richness had the highest overlap with total species richness regardless of resolution or definition of hotspot. We suggest that focusing conservation attention solely on areas of high total species richness will not necessarily contribute efforts towards species that are most at risk, nor will it protect other important dimensions of species richness.

Global Deep-Sea Biodiversity Research Trends Highlighted by Science Mapping Approach

Costa C, Fanelli E, Marini S, Danovaro R, Aguzzi J. Global Deep-Sea Biodiversity Research Trends Highlighted by Science Mapping Approach. Frontiers in Marine Science [Internet]. 2020 ;7. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2020.00384/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1361476_45_Marine_20200625_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The scientific literature available on deep-sea biodiversity is ample and covers a wide array of objectives, geographic areas, and topics. It also explores the links between ecosystem functioning and productivity as well as modeling, management, and exploitation. New statistical analytical tools now allow the comprehensive monitoring of the status of deep-sea research to highlight global research topics and their trends, which deserve further development and economic investments. Here, we used a science mapping approach to provide a global and systematic bibliometric synthesis of these current research topics and their trends to identify the size, growth, trajectory, and geographic distribution of scientific efforts as well as to highlight the emerging topics. A total of 1287 deep-sea biodiversity publications were retrieved from the Scopus database from 1993 to the present. Both established and emerging research topics were identified: (i) biogeochemical, microbial, and molecular analyses; (ii) biodiversity assessments; (iii) ecosystem conservation and management; and, finally, (iv) zoology and taxocoenosis. The temporal change in research activity (which was assessed by subdividing publications into blocks from 1993 to 2010 and 2011 to 2019) demonstrated that the “biogeochemical, microbial, and molecular analyses” cluster was not present from 1993 to 2010 since it was included in the cluster for “biodiversity assessments,” which it eventually diverged from in the following couple of decades. The United States took the dominant role in research, followed by the United Kingdom; Germany and France were also evidenced. China was particularly associated with the United States.

Sustaining Canadian marine biodiversity: Policy and statutory progress

Hutchings JA, Baum JK, Fuller SD, Laughren J, VanderZwaag DL. Sustaining Canadian marine biodiversity: Policy and statutory progress Blais JM. FACETS [Internet]. 2020 ;5(1):264 - 288. Available from: https://www.facetsjournal.com/doi/10.1139/facets-2020-0006
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

A 2012 Expert Panel Report on marine biodiversity by the Royal Society of Canada (RSC) concluded that Canada faced significant challenges in achieving sustainable fisheries, regulating aquaculture, and accounting for climate change. Relative to many countries, progress by Canada in fulfilling international obligations to sustain biodiversity was deemed poor. To track progress by Canada since 2012, the RSC struck a committee to track policy and statutory developments on matters pertaining to marine biodiversity and to identify policy challenges, and leading options for implementation that lie ahead. The report by the Policy Briefing Committee is presented here. It concluded that Canada has made moderate to good progress in some areas, such as prioritization of oceans stewardship and strengthening of the evidentiary use of science in decision-making. Key statutes were strengthened through amendments, including requirements to rebuild depleted fisheries (Fisheries Act) and new means of creating marine protected areas (Oceans Act) that allowed Canada to exceed its international obligation to protect 10% of coastal and marine areas by 2020. Public release of mandate letters has strengthened ministerial accountability. However, little or no progress has been made in reducing regulatory conflict with Fisheries and Oceans Canada (DFO), decreasing ministerial discretion under the Fisheries Act, clarifying the role of science in sustainable fisheries policy, and accounting for climate change. Five future policy challenges are identified: (1) Ensure climate change impacts and projections are incorporated into ocean-related decision making and planning processes; (2) Resolve DFO’s regulatory conflict to conserve and exploit biodiversity; (3) Limit ministerial discretionary power in fisheries management decisions; (4) Clarify ambiguities in how the Precautionary Approach is applied in sustainable fisheries policy; and (5) Advance and implement marine spatial planning. Since 2012, there has been progress in recovering and sustaining the health of Canada’s oceans. Failure to further strengthen biodiversity conservation threatens the capacity of Canada’s oceans to provide ecosystem services that contribute to the resilience of marine life and the well-being of humankind. Unprecedented and enduring changes in the ocean caused by climate change have made the achievement of meaningful progress all the more urgent.

Metabolic Niches and Biodiversity: A Test Case in the Deep Sea Benthos

McClain CR, Webb TJ, Nunnally CC, S. Dixon R, Finnegan S, Nelson JA. Metabolic Niches and Biodiversity: A Test Case in the Deep Sea Benthos. Frontiers in Marine Science [Internet]. 2020 ;7. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2020.00216/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1320398_45_Marine_20200505_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The great anthropogenic alterations occurring to carbon availability in the oceans necessitate an understanding of the energy requirements of species and how changes in energy availability may impact biodiversity. The deep-sea floor is characterized naturally by extremely low availability of chemical energy and is particularly vulnerable to changes in carbon flux from surface waters. Because the energetic requirements of organisms impact nearly every aspect of their ecology and evolution, we hypothesize that species are adapted to specific levels of carbon availability and occupy a particular metabolic niche. We test this hypothesis in deep-sea, benthic invertebrates specifically examining how energetic demand, axes of the metabolic niche, and geographic range size vary over gradients of chemical energy availability. We find that benthic invertebrates with higher energetic expenditures, and ecologies associated with high energy demand, are located in areas with higher chemical energy availability. In addition, we find that range size and location of deep-sea, benthic species is determined by geographic patterns in chemical energy availability. Our findings indicate that species may be adapted to specific energy regimes, and the metabolic niche can potentially link scales from individuals to ecosystems as well as adaptation to patterns in biogeography and biodiversity.

Supporting the essential - Recommendations for the development of accessible and interoperable marine biological data products

Lear D, Herman P, Van Hoey G, Schepers L, Tonné N, Lipizer M, Muller-Karger FE, Appeltans W, Kissling WD, Holdsworth N, et al. Supporting the essential - Recommendations for the development of accessible and interoperable marine biological data products. Marine Policy [Internet]. 2020 ;117:103958. Available from: https://www.sciencedirect.com/science/article/pii/S0308597X19301915
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

In this paper we outline the stakeholder-led approaches in the development of biological data products to support effective conservation, management and policy development. The requirements of a broad range of stakeholders and iterative, structured processes framed the development of tools, models and maps that support the FAIR (Findable, Accessible, Interoperable, Reusable) data principles. By structuring the resultant data products around the emerging biological Essential Ocean Variables, and through the engagement with a broad range of end-users, the EMODnet (European Marine Observation and Data Network) Biology project has delivered a suite of demonstration data products. These products are presented in the European Atlas of Marine Life, an online resource demonstrating the value of open marine biodiversity data and help to answer fundamental and policy-driven questions related to managing the natural and anthropogenic impacts in European waters.

Underprotected Marine Protected Areas in a Global Biodiversity Hotspot

Claudet J, Loiseau C, Sostres M, Zupan M. Underprotected Marine Protected Areas in a Global Biodiversity Hotspot. One Earth [Internet]. 2020 ;2(4):380 - 384. Available from: https://www.sciencedirect.com/science/article/pii/S2590332220301500
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Ocean health is critical for human well-being but is threatened by multiple stressors. Parties to the Convention on Biological Diversity agreed to protect 10% of their waters by 2020. The scientific evidence supporting the use of marine protected areas (MPAs) to conserve biodiversity stems primarily from knowledge on fully protected areas, but most of what is being established is partially protected. Here, we assess the protection levels of the 1,062 Mediterranean MPAs. While 6.01% of the Mediterranean is covered by protection, 95% of this area shows no difference between the regulations imposed inside the MPAs compared with those outside. Full and high levels of protection, the most effective for biodiversity conservation, represent only 0.23% of the basin and are unevenly distributed across political boundaries and eco-regions. Our current efforts are insufficient at managing human uses of nature at sea, and protection levels should be increased to deliver tangible benefits for biodiversity conservation.

Evaluating the effectiveness of a large multi-use MPA in protecting Key Biodiversity Areas for marine predators

Handley JM, Pearmain EJ, Oppel S, Carneiro APB, Hazin C, Phillips RA, Ratcliffe N, Staniland IJ, Clay TA, Hall J, et al. Evaluating the effectiveness of a large multi-use MPA in protecting Key Biodiversity Areas for marine predators Santini L. Diversity and Distributions [Internet]. 2020 . Available from: https://onlinelibrary.wiley.com/doi/full/10.1111/ddi.13041
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Aim

Marine protected areas can serve to regulate harvesting and conserve biodiversity. Within large multi‐use MPAs, it is often unclear to what degree critical sites of biodiversity are afforded protection against commercial activities. Addressing this issue is a prerequisite if we are to appropriately assess sites against conservation targets. We evaluated whether the management regime of a large MPA conserved sites (Key Biodiversity Areas, KBAs) supporting the global persistence of top marine predators.

Location

Southwest Atlantic Ocean.

Method

We collated population and tracking data (1,418 tracks) from 14 marine predator species (Procellariiformes, Sphenisciformes, Pinnipedia) that breed at South Georgia and the South Sandwich Islands, and identified hotspots for their conservation under the recently developed KBA framework. We then evaluated the spatiotemporal overlap of these sites and the different management regimes of krill, demersal longline and pelagic trawl fisheries operating within a large MPA, which was created with the intention to protect marine predator species.

Results

We identified 12 new global marine KBAs that are important for this community of top predators, both within and beyond the focal MPA. Only three species consistently used marine areas at a time when a potentially higher‐risk fishery was allowed to operate in that area, while other interactions between fisheries and our target species were mostly precluded by MPA management plans.

Main conclusions

We show that current fishery management measures within the MPA contribute to protecting top predators considered in this study and that resource harvesting within the MPA does not pose a major threat—under current climate conditions. Unregulated fisheries beyond the MPA, however, pose a likely threat to identified KBAs. Our approach demonstrates the utility of the KBA guidelines and multispecies tracking data to assess the contributing role of well‐designed MPAs in achieving local and internationally agreed conservation targets.

Functional diversity of marine megafauna in the Anthropocene

Pimiento C, Leprieur F, Silvestro D, Lefcheck JS, Albouy C, Rasher DB, Davis M, Svenning J-C, Griffin JN. Functional diversity of marine megafauna in the Anthropocene. Science Advances [Internet]. 2020 ;6(16):eaay7650. Available from: https://advances.sciencemag.org/content/6/16/eaay7650
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Marine megafauna, the largest animals in the oceans, serve key roles in ecosystem functioning. Yet, one-third of these animals are at risk of extinction. To better understand the potential consequences of megafaunal loss, here we quantify their current functional diversity, predict future changes under different extinction scenarios, and introduce a new metric [functionally unique, specialized and endangered (FUSE)] that identifies threatened species of particular importance for functional diversity. Simulated extinction scenarios forecast marked declines in functional richness if current trajectories are maintained during the next century (11% globally; up to 24% regionally), with more marked reductions (48% globally; up to 70% at the poles) beyond random expectations if all threatened species eventually go extinct. Among the megafaunal groups, sharks will incur a disproportionate loss of functional richness. We identify top FUSE species and suggest a renewed focus on these species to preserve the ecosystem functions provided by marine megafauna.

Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA

McClenaghan B, Compson ZG, Hajibabaei M. Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA Doi H. PLOS ONE [Internet]. 2020 ;15(3):e0224119. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0224119
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Environmental DNA (eDNA) metabarcoding is an increasingly popular method for rapid biodiversity assessment. As with any ecological survey, false negatives can arise during sampling and, if unaccounted for, lead to biased results and potentially misdiagnosed environmental assessments. We developed a multi-scale, multi-species occupancy model for the analysis of community biodiversity data resulting from eDNA metabarcoding; this model accounts for imperfect detection and additional sources of environmental and experimental variation. We present methods for model assessment and model comparison and demonstrate how these tools improve the inferential power of eDNA metabarcoding data using a case study in a coastal, marine environment. Using occupancy models to account for factors often overlooked in the analysis of eDNA metabarcoding data will dramatically improve ecological inference, sampling design, and methodologies, empowering practitioners with an approach to wield the high-resolution biodiversity data of next-generation sequencing platforms.

Options for managing human threats to high seas biodiversity

O'Leary BC, Hoppit G, Townley A, Allen HL, McIntyre CJ, Roberts CM. Options for managing human threats to high seas biodiversity. Ocean & Coastal Management [Internet]. 2020 ;187:105110. Available from: https://www.sciencedirect.com/science/article/pii/S096456912030020X
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Areas beyond national jurisdiction (ABNJ) constitute 61% of the world's oceans and are collectively managed by countries under the United Nations Convention on the Law of the Sea (UNCLOS). Growing concern regarding the deteriorating state of the oceans and ineffective management of ABNJ has resulted in negotiations to develop an international legally binding instrument (ILBI) for the conservation and sustainable use of biodiversity beyond national jurisdiction under UNCLOS. To inform these negotiations, we identified existing and emerging human activities and influences that affect ABNJ and evaluated management options available to mitigate the most pervasive, with highest potential for impact and probability of emergence. The highest-ranking activities and influences that affect ABNJ were fishing/hunting, maritime shipping, climate change and its associated effects, land-based pollution and mineral exploitation. Management options are diverse and available through a variety of actors, although their actions are not always effective. Area-based management tools (ABMTs), including marine protected areas (MPAs), were the only consistently effective option to mitigate impacts across high-ranked activities and influences. However, addressing land-based pollution will require national action to prevent this at its source, and MPAs offer only a partial solution for climate change. A new ABNJ ILBI could help unify management options and actors to conserve marine biodiversity and ensure sustainable use. Incorporating a mechanism to establish effective ABMTs into the ILBI will help deliver multiple objectives based on the ecosystem approach.

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