Tools and Data

Comparison of diver operated stereo-video and visual census to assess targeted fish species in Mediterranean marine protected areas

Grane-Feliu X, Bennett S, Hereu B, Aspillaga E, Santana-Garcon J. Comparison of diver operated stereo-video and visual census to assess targeted fish species in Mediterranean marine protected areas. Journal of Experimental Marine Biology and Ecology [Internet]. 2019 ;520:151205. Available from: https://www.sciencedirect.com/science/article/pii/S0022098119300838?dgcid=raven_sd_search_email
Freely available?: 
No
Summary available?: 
No
Approximate cost to purchase or rent this item from the publisher: 
US $39.95
Type: Journal Article

Underwater visual census (UVC) is currently the primary tool used to survey shallow water fish assemblages in the Mediterranean Sea. However, the rapid development of digital technologies, such as underwater video cameras and photogrammetric techniques, are providing new sampling opportunities in marine ecosystems. In this study we compare two non-destructive sampling methods, UVC and diver operated stereo-video systems (stereo-DOVs), to characterize assemblages of targeted fish species. Surveys were undertaken in three zones with different levels of protection from fishing (MR, marine reserve; PP, partially protected reserve; NP, non-protected area) in the Montgrí, Medes Islands and Baix Ter Natural Park (NW Mediterranean Sea). There were no statistically significant differences between stereo-DOVs and UVC surveys in terms of species richness, relative abundance and biomass of targeted fish species across the three protection levels. Both methodologies found statistically significant differences between areas closed to fishing (MR) and areas where fishing is regulated (PP) or allowed (NP), whereby higher fish biomass, density, species richness and larger sizes were found in MR surveys. Length estimates of fish were comparable between methods albeit with some species-specific differences in the size-distribution, and a tendency for UVC to overestimate the size of larger fishes. Our results suggest that stereo-DOVs provide an equivalent and complementary technique to UVC to survey assemblages of targeted fish species. In addition to structural data (e.g., biomass, abundance, and length) recorded by UVC, stereo-DOVs provide a permanent visual record of a fish community and enable additional factors such as fish behaviour, precise distance and length, and benthic composition to be quantified. Stereo-DOVs may, therefore, facilitate the continuity and expansion of long-term monitoring programs of fish assemblages in the Mediterranean Sea.

Lessons From the Pacific Ocean Portal: Building Pacific Island Capacity to Interpret, Apply, and Communicate Ocean Information

Powers M, Begg Z, Smith G, Miles E. Lessons From the Pacific Ocean Portal: Building Pacific Island Capacity to Interpret, Apply, and Communicate Ocean Information. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00476/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1069909_45_Marine_20190815_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The need for improved access to ocean observations for Pacific Island countries (PICs) and territories has been increasingly recognized over the last decade, particularly in the face of a changing climate. Although more remote sensing and in situ data are available than ever before, however, oceanographic, and marine forecasting expertise in the region is limited. To support capacity building in these areas, the Climate and Oceans Support Program in the Pacific (COSPPac) has engaged with partners in the National Meteorological Services (NMS) and other relevant agencies in 14 Pacific Island nations, to identify priorities and to develop tools and training to address these needs. A key tool is the online Pacific Ocean Portal. With a focus on the Pacific Islands region, this website provides ocean data relevant to a range of sectors and applications such as tourism, fishing, shipping, coastal inundation, and environmental management. Via a user-friendly interface, the portal serves up data from a variety of sources including near real-time observations, historical information and forecast data. Training modules have been designed for portal users and delivery has gone hand-in-hand with in-country stakeholder engagement workshops, allowing sector users to make requests for ocean information products. Eight workshops have been delivered from November 2015 to June 2018, training a total of 97 NMS staff and 116 ocean sector stakeholders including port authorities, disaster management, tourism, fisheries, community leaders, and many more. As a result, five Pacific Island NMSs (Tonga, Tuvalu, Kiribati, Samoa, and Vanuatu) are now producing monthly Ocean Outlooks, guided by the needs of in-country stakeholders. Outlooks are tailored for each country and can include forecasts such as sea surface temperature, coral bleaching, and sea level, as well as information about current chlorophyll conditions, wind, and wave climate.

Observing Requirements for Long-Term Climate Records at the Ocean Surface

Kent EC, Rayner NA, Berry DI, Eastman R, Grigorieva VG, Huang B, Kennedy JJ, Smith SR, Willett KM. Observing Requirements for Long-Term Climate Records at the Ocean Surface. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00441/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1069909_45_Marine_20190815_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Observations of conditions at the ocean surface have been made for centuries, contributing to some of the longest instrumental records of climate change. Most prominent is the climate data record (CDR) of sea surface temperature (SST), which is itself essential to the majority of activities in climate science and climate service provision. A much wider range of surface marine observations is available however, providing a rich source of data on past climate. We present a general error model describing the characteristics of observations used for the construction of climate records, illustrating the importance of multi-variate records with rich metadata for reducing uncertainty in CDRs. We describe the data and metadata requirements for the construction of stable, multi-century marine CDRs for variables important for describing the changing climate: SST, mean sea level pressure, air temperature, humidity, winds, clouds, and waves. Available sources of surface marine data are reviewed in the context of the error model. We outline the need for a range of complementary observations, including very high quality observations at a limited number of locations and also observations that sample more broadly but with greater uncertainty. We describe how high-resolution modern records, particularly those of high-quality, can help to improve the quality of observations throughout the historical record. We recommend the extension of internationally-coordinated data management and curation to observation types that do not have a primary focus of the construction of climate records. Also recommended is reprocessing the existing surface marine climate archive to improve and quantify data and metadata quality and homogeneity. We also recommend the expansion of observations from research vessels and high quality moorings, routine observations from ships and from data and metadata rescue. Other priorities include: field evaluation of sensors; resources for the process of establishing user requirements and determining whether requirements are being met; and research to estimate uncertainty, quantify biases and to improve methods of construction of CDRs. The requirements developed in this paper encompass specific actions involving a variety of stakeholders, including funding agencies, scientists, data managers, observing network operators, satellite agencies, and international co-ordination bodies.

Doctor Drone: Non-invasive Measurement of Humpback Whale Vital Signs Using Unoccupied Aerial System Infrared Thermography

Horton TW, Hauser N, Cassel S, K. Klaus F, Fettermann T, Key N. Doctor Drone: Non-invasive Measurement of Humpback Whale Vital Signs Using Unoccupied Aerial System Infrared Thermography. Frontiers in Marine Science [Internet]. 2019 ;6. Available from: https://www.frontiersin.org/articles/10.3389/fmars.2019.00466/full?utm_source=F-AAE&utm_medium=EMLF&utm_campaign=MRK_1069909_45_Marine_20190815_arts_A
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

Measuring and monitoring the behavior and biomedical condition of free-ranging whales remains a fundamental challenge in cetacean science and conservation. Advances in unoccupied aerial systems (UAS) and infrared thermography (IRT) create unprecedented opportunities to fill these knowledge gaps and advance our understanding of how cetaceans interact with the environment. Here, we show that non-invasive UAS-IRT systems, deployed from shore-based positions in a humpback whale (Megaptera novaeangliae) calving ground, can be used to document rarely observed whale behaviors and to quantify biomedical vital signs, including blowhole and dorsal fin skin temperature, respiration rate, and heart rate. Our findings demonstrate: (1) prolonged (>3 h) logging behavior by a mother-calf pair located ∼550 m offshore; (2) that the calf’s respiration rate (∼3 breaths per minute) was six times higher than its mother’s (∼0.5 breaths per minute); (3) that the calf’s blowholes were ∼1.55°C warmer than adjacent ocean water and that the mother’s blowholes were ∼2.16°C warmer than adjacent ocean water; (4) that the mother’s dorsal fin included four infrared (IR) hot-spots, each separated by ∼20 cm in horizontal distance, that ranged between 1 and 2°C warmer than adjacent ocean water; (5) a significant (p <<0.05; wavelet analysis) temporal cyclicity in the hottest of the mother’s dorsal fin hot-spots consistent with cardiovascular blood flow pumped at an apneic heart rate of ∼9.3 beats per minute. Despite these novel results, there remain several key limitations to UAS-IRT, including its: sensitivity to environmental conditions and animal behavior; equipment costs and associated risks; potential regulatory restrictions; time-intensive nature of IR data processing; factors that can impact data quality, such as imaging angle and sensor accuracy. Future opportunities created by the UAS-IRT results we report center on the potential to couple non-invasive behavioral and physiological monitoring tools, quantify cetacean response to prolonged environmental change and acute disturbances, and extend UAS-IRT applications to cover a wider range of environmental and behavioral contexts. Considering the small sample size of the dataset we report, application of UAS-IRT to live-stranded and captive cetaceans, where environmental and cetacean conditions can be independently measured, is of paramount importance.

A survey on visual analysis of ocean data

Xie C, Li M, wang H, Dong J. A survey on visual analysis of ocean data. Visual Informatics [Internet]. 2019 . Available from: https://www.sciencedirect.com/science/article/pii/S2468502X19300440?dgcid=raven_sd_search_email
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

A major challenge in analysis of huge amounts of ocean data is the complexity of the data and the inherent complexity of ocean dynamic process. Interactive visual analysis serves as an efficient complementary approach for the detection of various phenomenon or patterns, and correlation exploring or comparing multiple variables in researchers daily work. Firstly, this paper presents a basic concept of ocean data produced from numerous measurement devices or computer simulations. The characteristics of ocean data and the related data processing techniques are also described. Secondly, the main tasks of ocean data analysis are introduced. Based on the main analysis tasks in ocean domain, the survey emphasizes related interactive visualization techniques and tools from four aspects: visualization of multiple ocean environmental elements and multivariate analysis, ocean phenomena identification and tracking, patterns or correlation discovery, ensembles and uncertainties exploration. Finally, the opportunities are discussed for future studies.

A novel screening tool for the health risk in recreational waters near estuary: The Carrying Capacity indicator

Di Dato M, Galešić M, Šimundić P, Andričević R. A novel screening tool for the health risk in recreational waters near estuary: The Carrying Capacity indicator. Science of The Total Environment [Internet]. 2019 ;694:133584. Available from: https://www.sciencedirect.com/science/article/pii/S0048969719335090?via%3Dihub
Freely available?: 
No
Summary available?: 
No
Type: Journal Article

The present study aims to provide a conceptual framework to help practitioners to improve the quality of recreational waters near estuary, which may be affected by untreated wastewater from Combined Sewer Overflows (CSOs). When CSOs are activated, the concentration of bacteria (e.g., Enterococci and E. coli) in estuary increases, thereby resulting in a potential health threat to swimmers. Here, the bacterial exposure is evaluated using physically-based stochastic model for contaminant transport, while human health risk is determined by Quantitative Microbial Risk Assessment (QMRA). Based on human health risk framework, we quantify the Carrying Capacity (CC) of the recreational water body. Such an indicator is defined as the number of swimming individuals that can be sustained in a beach resort with an acceptable risk threshold. The CC increases by dilution processes and by reduction of the source concentration, which in turn depends on the improvements in the sewage system. The presented approach can be a useful screening tool for policy-makers and other stakeholders, thereby providing a potential solution to the trade-off between economic development and the sustainable ecosystem in coastal areas.

The Active Reef Restoration Toolbox is a Vehicle for Coral Resilience and Adaptation in a Changing World

Rinkevich . The Active Reef Restoration Toolbox is a Vehicle for Coral Resilience and Adaptation in a Changing World. Journal of Marine Science and Engineering [Internet]. 2019 ;7(7):201. Available from: https://www.mdpi.com/2077-1312/7/7/201
Freely available?: 
Yes
Summary available?: 
No
Type: Journal Article

The accelerating marks of climate change on coral-reef ecosystems, combined with the recognition that traditional management measures are not efficient enough to cope with climate change tempo and human footprints, have raised a need for new approaches to reef restoration. The most widely used approach is the “coral gardening” tenet; an active reef restoration tactic based on principles, concepts, and theories used in silviculture. During the relatively short period since its inception, the gardening approach has been tested globally in a wide range of reef sites, and on about 100 coral species, utilizing hundreds of thousands of nursery-raised coral colonies. While still lacking credibility for simulating restoration scenarios under forecasted climate change impacts, and with a limited adaptation toolkit used in the gardening approach, it is still deficient. Therefore, novel restoration avenues have recently been suggested and devised, and some have already been tested, primarily in the laboratory. Here, I describe seven classes of such novel avenues and tools, which include the improved gardening methodologies, ecological engineering approaches, assisted migration/colonization, assisted genetics/evolution, assisted microbiome, coral epigenetics, and coral chimerism. These are further classified into three operation levels, each dependent on the success of the former level. Altogether, the seven approaches and the three operation levels represent a unified active reef restoration toolbox, under the umbrella of the gardening tenet, focusing on the enhancement of coral resilience and adaptation in a changing world. 

Fishers’ knowledge improves the accuracy of food web model predictions

Bentley JW, Serpetti N, Fox C, Heymans JJ, Reid DG. Fishers’ knowledge improves the accuracy of food web model predictions Coll M. ICES Journal of Marine Science [Internet]. 2019 . Available from: https://academic.oup.com/icesjms/article-abstract/76/4/897/5304545?redirectedFrom=fulltext
Freely available?: 
No
Summary available?: 
No
Approximate cost to purchase or rent this item from the publisher: 
US $45.00
Type: Journal Article

Fisher's knowledge offers a valuable source of information to run parallel to observed data and fill gaps in our scientific knowledge. In this study we demonstrate how fishers' knowledge of historical fishing effort was incorporated into an Ecopath with Ecosim (EwE) model of the Irish Sea to fill the significant gap in scientific knowledge prior to 2003. The Irish Sea model was fitted and results compared using fishing effort time-series based on: (i) scientific knowledge, (ii) fishers' knowledge, (iii) adjusted fishers' knowledge, and (iv) a combination of (i) and (iii), termed “hybrid knowledge.” The hybrid model produced the best overall statistical fit, capturing the biomass trends of commercially important stocks. Importantly, the hybrid model also replicated the increase in landings of groups such as “crabs & lobsters” and “epifauna” which were poorly simulated in scenario (i). Incorporating environmental drivers and adjusting vulnerabilities in the foraging arena further improved model fit, therefore the model shows that both fishing and the environment have historically influenced trends in finfish and shellfish stocks in the Irish Sea. The co-production of knowledge approach used here improved the accuracy of model simulations and may prove fundamental for developing ecosystem-based management advice in a global context.

A data-limited method for assessing cumulative fishing risk on bycatch

Zhou S, Daley RM, Fuller M, Bulman CM, Hobday AJ. A data-limited method for assessing cumulative fishing risk on bycatch. ICES Journal of Marine Science [Internet]. 2019 . Available from: https://academic.oup.com/icesjms/article-abstract/76/4/837/5303697?redirectedFrom=fulltext
Freely available?: 
No
Summary available?: 
No
Approximate cost to purchase or rent this item from the publisher: 
US $45.00
Type: Journal Article

To assess fishing effects on data-poor species, impact can be derived from spatial overlap between species distribution and fishing effort and gear catchability. Here, we enhance the existing sustainability assessment for fishing effect method by estimating gear efficiency and heterogeneous density from sporadic catch data. We apply the method to two chondrichthyan bycatch species, Bight Skate and Draughtboard Shark in Australia, to assess cumulative fishing mortality (Fcum) from multiple fisheries. Gear efficiency is estimated from a Bayesian mixture distribution model and fish density is predicted by a generalized additive model. These results, combined with actual fishing effort, allow estimation of fishing mortality in each sector and subsequently, the Fcum. Risk is quantified by comparing Fcum with reference points based on life history parameters. When only the point estimates were considered, our result indicates that for the period 2009 and 2010 Bight Skate caught in 14 fisheries was at high cumulative risk (Fcum ≥ Flim) while Draughtboard Shark caught by 19 fisheries was at low cumulative risk (Fcum ≤ Fmsy). Because of the high cost of conducting cumulative risk assessments, we recommend examining the distribution of fishing effort across fisheries before carrying out the assessments.

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